IL_9G33_049

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

9G33|1|D3|A|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_049 not in the Motif Atlas

Geometric match to IL_8P9A_242

Geometric discrepancy: 0.2561

The information below is about IL_8P9A_242

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9G33|1|D3|U|482
9G33|1|D3|A|483
*
9G33|1|D3|U|504
9G33|1|D3|A|505
9G33|1|D3|A|506

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JM

rRNA-processing protein FCF2

Chain UC

Something about silencing protein 10