IL_9G33_054

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGG*CG

Length

5 nucleotides

Bulged bases

9G33|1|D3|G|1118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_054 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3082

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

9G33|1|D3|U|1117
9G33|1|D3|G|1118
9G33|1|D3|G|1119
*
9G33|1|D4|C|6
9G33|1|D4|G|7

Current chains

Chain D3

18S rRNA

Chain D4

U3 snoRNA

Nearby chains

Chain UB

Nucleolar complex protein 14