IL_9G33_055

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

9G33|1|D4|U|2

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_055 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.2494

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9G33|1|D3|G|1122
9G33|1|D3|C|1123
*
9G33|1|D4|G|1
9G33|1|D4|U|2
9G33|1|D4|C|3

Current chains

Chain D3

18S rRNA

Chain D4

U3 snoRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain JN

Protein FAF1