IL_9G33_060

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9G33|1|D3|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G33_060 not in the Motif Atlas

Geometric match to IL_2UWM_003

Geometric discrepancy: 0.3353

The information below is about IL_2UWM_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9G33|1|D3|G|1268
9G33|1|D3|U|1269
9G33|1|D3|G|1270
*
9G33|1|D3|C|1440
9G33|1|D3|C|1441

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JF

Ribosomal RNA small subunit methyltransferase NEP1

Chain JH

Essential nuclear protein 1