IL_9G5D_008

3D structure

PDB id

9G5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUCAA*UCAAAACG

Length

14 nucleotides

Bulged bases

9G5D|1|A|U|758, 9G5D|1|A|A|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G5D_008 not in the Motif Atlas

Geometric match to IL_4LFB_011

Geometric discrepancy: 0.1355

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.6

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

7

Unit IDs

9G5D|1|A|C|756
9G5D|1|A|A|757
9G5D|1|A|U|758
9G5D|1|A|C|759
9G5D|1|A|A|760
9G5D|1|A|A|761
*
9G5D|1|A|U|779
9G5D|1|A|C|780
9G5D|1|A|A|781
9G5D|1|A|A|782
9G5D|1|A|A|783
9G5D|1|A|A|784
9G5D|1|A|C|785
9G5D|1|A|G|786

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain 3

Aurora kinase A-interacting protein

Chain J

28S ribosomal protein S12, mitochondrial

Chain L

28S ribosomal protein S15, mitochondrial

Chain N

28S ribosomal protein S17, mitochondrial