IL_9G5D_030

3D structure

PDB id

9G5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

9G5D|1|A|A|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G5D_030 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3693

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9G5D|1|A|U|1208
9G5D|1|A|C|1209
*
9G5D|1|A|G|1355
9G5D|1|A|A|1356
9G5D|1|A|A|1357

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain a

Putative ribosome-binding factor A, mitochondrial