IL_9G5D_041

3D structure

PDB id

9G5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G5D_041 not in the Motif Atlas

Geometric match to IL_8CRE_467

Geometric discrepancy: 0.2701

The information below is about IL_8CRE_467

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9G5D|1|A|G|1485
9G5D|1|A|C|1486
9G5D|1|A|C|1487
9G5D|1|A|C|1488
*
9G5D|1|A|G|1562
9G5D|1|A|U|1563
9G5D|1|A|A|1564
9G5D|1|A|A|1565
9G5D|1|A|C|1566

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain b

12S rRNA N4-methylcytidine (m4C) methyltransferase