IL_9G5E_016
3D structure
- PDB id
- 9G5E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translation-initiation state of human mitochondrial ribosome small subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 9G5E|1|A|A|938
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G5E_016 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.1563
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
9G5E|1|A|C|935
9G5E|1|A|G|936
9G5E|1|A|U|937
9G5E|1|A|A|938
9G5E|1|A|A|939
9G5E|1|A|A|940
9G5E|1|A|G|941
*
9G5E|1|A|C|1133
9G5E|1|A|G|1134
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 2
- Small ribosomal subunit protein mS37
- Chain 3
- Aurora kinase A-interacting protein
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
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