IL_9G5E_041

3D structure

PDB id

9G5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACCC*GACAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G5E_041 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5689

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9G5E|1|A|C|1491
9G5E|1|A|A|1492
9G5E|1|A|C|1493
9G5E|1|A|C|1494
9G5E|1|A|C|1495
*
9G5E|1|A|G|1554
9G5E|1|A|A|1555
9G5E|1|A|C|1556
9G5E|1|A|A|1557
9G5E|1|A|A|1558
9G5E|1|A|G|1559

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 7

Translation initiation factor IF-2, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial