IL_9G6J_009

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_009 not in the Motif Atlas

Geometric match to IL_3TD0_006

Geometric discrepancy: 0.1515

The information below is about IL_3TD0_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9G6J|1|1|G|161
9G6J|1|1|U|162
9G6J|1|1|A|163
*
9G6J|1|1|U|257
9G6J|1|1|U|258
9G6J|1|1|C|259

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AI

Ribosomal 60S subunit protein L35A

Chain t

60S ribosomal protein L13