IL_9G6J_012

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GC*GACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_012 not in the Motif Atlas

Homologous match to IL_8CRE_011

Geometric discrepancy: 0.2095

The information below is about IL_8CRE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76709.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9G6J|1|1|G|176
9G6J|1|1|C|177
*
9G6J|1|1|G|238
9G6J|1|1|A|239
9G6J|1|1|C|240
9G6J|1|1|C|241

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AI

Ribosomal 60S subunit protein L35A

Chain t

60S ribosomal protein L13