IL_9G6J_021
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GGAUAAUGGC*GACGAUAC
- Length
- 18 nucleotides
- Bulged bases
- 9G6J|1|1|A|515, 9G6J|1|1|U|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_021 not in the Motif Atlas
- Homologous match to IL_8CRE_021
- Geometric discrepancy: 0.0711
- The information below is about IL_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85879.1
- Basepair signature
- cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9G6J|1|1|G|513
9G6J|1|1|G|514
9G6J|1|1|A|515
9G6J|1|1|U|516
9G6J|1|1|A|517
9G6J|1|1|A|518
9G6J|1|1|U|519
9G6J|1|1|G|520
9G6J|1|1|G|521
9G6J|1|1|C|522
*
9G6J|1|1|G|564
9G6J|1|1|A|565
9G6J|1|1|C|566
9G6J|1|1|G|567
9G6J|1|1|A|568
9G6J|1|1|U|569
9G6J|1|1|A|570
9G6J|1|1|C|571
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain l
- Ribosomal 60S subunit protein L4B
- Chain o
- Ribosomal 60S subunit protein L7A
- Chain u
- Ribosomal 60S subunit protein L14B
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