IL_9G6J_035

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

9G6J|1|1|U|870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_035 not in the Motif Atlas

Homologous match to IL_8P9A_260

Geometric discrepancy: 0.0469

The information below is about IL_8P9A_260

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9G6J|1|1|C|869
9G6J|1|1|U|870
9G6J|1|1|G|871
*
9G6J|1|1|C|882
9G6J|1|1|G|883

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AK

Ribosomal protein L37

Chain k

60S ribosomal protein L3