IL_9G6J_046

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UCUU*AA

Length

6 nucleotides

Bulged bases

9G6J|1|1|C|1011, 9G6J|1|1|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_046 not in the Motif Atlas

Geometric match to IL_4YAZ_008

Geometric discrepancy: 0.2424

The information below is about IL_4YAZ_008

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9G6J|1|1|U|1010
9G6J|1|1|C|1011
9G6J|1|1|U|1012
9G6J|1|1|U|1013
*
9G6J|1|1|A|1031
9G6J|1|1|A|1032

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Ribosomal 60S subunit protein L5

Chain r

Ribosomal 60S subunit protein L10