IL_9G6J_050

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_050 not in the Motif Atlas

Homologous match to IL_8P9A_275

Geometric discrepancy: 0.0586

The information below is about IL_8P9A_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G6J|1|1|U|1119
9G6J|1|1|U|1120
9G6J|1|1|U|1121
*
9G6J|1|1|A|1129
9G6J|1|1|G|1130
9G6J|1|1|A|1131

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain AC

60S ribosomal protein L29

Chain r

Ribosomal 60S subunit protein L10