IL_9G6J_059

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

9G6J|1|1|A|1382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_059 not in the Motif Atlas

Homologous match to IL_8CRE_062

Geometric discrepancy: 0.0728

The information below is about IL_8CRE_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9G6J|1|1|C|1381
9G6J|1|1|A|1382
9G6J|1|1|G|1383
*
9G6J|1|1|C|1416
9G6J|1|1|G|1417

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

Ribosomal 60S subunit protein L32

Chain l

Ribosomal 60S subunit protein L4B