IL_9G6J_070

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_070 not in the Motif Atlas

Homologous match to IL_8CRE_073

Geometric discrepancy: 0.0672

The information below is about IL_8CRE_073

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9G6J|1|1|G|1657
9G6J|1|1|G|1658
9G6J|1|1|C|1659
*
9G6J|1|1|G|1782
9G6J|1|1|A|1783
9G6J|1|1|C|1784

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AH

Ribosomal 60S subunit protein L34B

Chain AQ

Ribosomal 60S subunit protein L43A

Chain z

Ribosomal protein L19