IL_9G6J_082

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_082 not in the Motif Atlas

Homologous match to IL_8CRE_085

Geometric discrepancy: 0.059

The information below is about IL_8CRE_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9G6J|1|1|G|1936
9G6J|1|1|C|1937
9G6J|1|1|U|1938
*
9G6J|1|1|A|2084
9G6J|1|1|A|2085
9G6J|1|1|C|2086

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain J

40S ribosomal protein S8

Chain z

Ribosomal protein L19