IL_9G6J_085
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UGAUGG*UGUUGACA
- Length
- 14 nucleotides
- Bulged bases
- 9G6J|1|1|U|2137, 9G6J|1|1|U|2153, 9G6J|1|1|C|2157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_085 not in the Motif Atlas
- Homologous match to IL_8CRE_088
- Geometric discrepancy: 0.0538
- The information below is about IL_8CRE_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20047.1
- Basepair signature
- cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9G6J|1|1|U|2134
9G6J|1|1|G|2135
9G6J|1|1|A|2136
9G6J|1|1|U|2137
9G6J|1|1|G|2138
9G6J|1|1|G|2139
*
9G6J|1|1|U|2151
9G6J|1|1|G|2152
9G6J|1|1|U|2153
9G6J|1|1|U|2154
9G6J|1|1|G|2155
9G6J|1|1|A|2156
9G6J|1|1|C|2157
9G6J|1|1|A|2158
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AQ
- Ribosomal 60S subunit protein L43A
- Chain j
- Ribosomal 60S subunit protein L2A
Coloring options: