IL_9G6J_092
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9G6J|1|1|A|2259, 9G6J|1|1|C|2265, 9G6J|1|1|C|2284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_092 not in the Motif Atlas
- Homologous match to IL_8CRE_095
- Geometric discrepancy: 0.0575
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
9G6J|1|1|C|2255
9G6J|1|1|C|2256
9G6J|1|1|A|2257
9G6J|1|1|A|2258
9G6J|1|1|A|2259
9G6J|1|1|U|2260
9G6J|1|1|G|2261
9G6J|1|1|C|2262
9G6J|1|1|C|2263
9G6J|1|1|U|2264
9G6J|1|1|C|2265
9G6J|1|1|G|2266
*
9G6J|1|1|C|2282
9G6J|1|1|G|2283
9G6J|1|1|C|2284
9G6J|1|1|G|2285
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- Small ribosomal subunit protein eS32
- Chain AT
- Transfer RNA; tRNA
Coloring options: