3D structure

PDB id
9G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
9G6J|1|1|G|2578
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9G6J_097 not in the Motif Atlas
Homologous match to IL_8CRE_100
Geometric discrepancy: 0.0571
The information below is about IL_8CRE_100
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85599.2
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
9

Unit IDs

9G6J|1|1|U|2401
9G6J|1|1|A|2402
9G6J|1|1|G|2403
*
9G6J|1|1|U|2576
9G6J|1|1|G|2577
9G6J|1|1|G|2578
9G6J|1|1|G|2579

Current chains

Chain 1
25S rRNA

Nearby chains

Chain AP
Ribosomal 60S subunit protein L42A
Chain j
Ribosomal 60S subunit protein L2A
Chain v
Ribosomal protein L15

Coloring options:


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