IL_9G6J_115
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 9G6J|1|1|A|3114, 9G6J|1|1|C|3115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_115 not in the Motif Atlas
- Homologous match to IL_8P9A_342
- Geometric discrepancy: 0.0448
- The information below is about IL_8P9A_342
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
9G6J|1|1|C|2976
9G6J|1|1|A|2977
9G6J|1|1|A|2978
9G6J|1|1|U|2979
*
9G6J|1|1|A|3111
9G6J|1|1|G|3112
9G6J|1|1|A|3113
9G6J|1|1|A|3114
9G6J|1|1|C|3115
9G6J|1|1|G|3116
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain k
- 60S ribosomal protein L3
- Chain w
- Ribosomal 60S subunit protein L16A
Coloring options: