3D structure

PDB id
9G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
UAAUU*ACCA
Length
9 nucleotides
Bulged bases
9G6J|1|1|C|3064, 9G6J|1|1|C|3065
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9G6J_118 not in the Motif Atlas
Homologous match to IL_8CRE_126
Geometric discrepancy: 0.0569
The information below is about IL_8CRE_126
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83150.2
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

9G6J|1|1|U|3019
9G6J|1|1|A|3020
9G6J|1|1|A|3021
9G6J|1|1|U|3022
9G6J|1|1|U|3023
*
9G6J|1|1|A|3063
9G6J|1|1|C|3064
9G6J|1|1|C|3065
9G6J|1|1|A|3066

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 6
Ribosomal 60S subunit protein L23B
Chain 7
Ribosomal 60S subunit protein L24A
Chain k
60S ribosomal protein L3

Coloring options:


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