3D structure

PDB id
9G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
CAC*GCG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9G6J_122 not in the Motif Atlas
Homologous match to IL_8CRE_130
Geometric discrepancy: 0.1303
The information below is about IL_8CRE_130
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

9G6J|1|1|C|3134
9G6J|1|1|A|3135
9G6J|1|1|C|3136
*
9G6J|1|1|G|3249
9G6J|1|1|C|3250
9G6J|1|1|G|3251

Current chains

Chain 1
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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