IL_9G6J_134

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_134 not in the Motif Atlas

Homologous match to IL_8CRE_141

Geometric discrepancy: 0.1287

The information below is about IL_8CRE_141

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9G6J|1|1|A|3307
9G6J|1|1|G|3308
9G6J|1|1|A|3309
9G6J|1|1|G|3310
*
9G6J|1|1|C|3325
9G6J|1|1|G|3326
9G6J|1|1|A|3327
9G6J|1|1|U|3328

Current chains

Chain 1

25S rRNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain z

Ribosomal protein L19