IL_9G6J_140
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UCCCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_140 not in the Motif Atlas
- Homologous match to IL_8OI5_138
- Geometric discrepancy: 0.0708
- The information below is about IL_8OI5_138
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.13
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 13
Unit IDs
9G6J|1|3|U|32
9G6J|1|3|C|33
9G6J|1|3|C|34
9G6J|1|3|C|35
9G6J|1|3|C|36
*
9G6J|1|3|G|41
9G6J|1|3|A|42
9G6J|1|3|U|43
9G6J|1|3|C|44
9G6J|1|3|A|45
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- Ribosomal 60S subunit protein L5
- Chain s
- Ribosomal 60S subunit protein L11B
Coloring options: