3D structure

PDB id
9G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
ACCGAGUAG*CGAAACU
Length
16 nucleotides
Bulged bases
9G6J|1|3|C|73
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9G6J_141 not in the Motif Atlas
Homologous match to IL_8OI5_139
Geometric discrepancy: 0.0639
The information below is about IL_8OI5_139
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

9G6J|1|3|A|72
9G6J|1|3|C|73
9G6J|1|3|C|74
9G6J|1|3|G|75
9G6J|1|3|A|76
9G6J|1|3|G|77
9G6J|1|3|U|78
9G6J|1|3|A|79
9G6J|1|3|G|80
*
9G6J|1|3|C|100
9G6J|1|3|G|101
9G6J|1|3|A|102
9G6J|1|3|A|103
9G6J|1|3|A|104
9G6J|1|3|C|105
9G6J|1|3|U|106

Current chains

Chain 3
5S rRNA

Nearby chains

Chain 0
60S ribosomal protein L20
Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 2
Ribosomal 60S subunit protein L21A
Chain o
Ribosomal 60S subunit protein L7A
Chain r
Ribosomal 60S subunit protein L10

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1423 s