3D structure

PDB id
9G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
GGGAUC*GUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9G6J_189 not in the Motif Atlas
Homologous match to IL_8P9A_423
Geometric discrepancy: 0.0836
The information below is about IL_8P9A_423
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_97273.1
Basepair signature
cWW-tSH-cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

9G6J|1|A|G|970
9G6J|1|A|G|971
9G6J|1|A|G|972
9G6J|1|A|A|973
9G6J|1|A|U|974
9G6J|1|A|C|975
*
9G6J|1|A|G|999
9G6J|1|A|U|1000
9G6J|1|A|C|1001

Current chains

Chain A
18S rRNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain P
Ribosomal 40S subunit protein S14B
Chain b
40S ribosomal protein S26
Chain j
Ribosomal 60S subunit protein L2A

Coloring options:


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