IL_9G6J_198
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_198 not in the Motif Atlas
- Homologous match to IL_8CRE_446
- Geometric discrepancy: 0.0844
- The information below is about IL_8CRE_446
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9G6J|1|A|C|1158
9G6J|1|A|C|1159
9G6J|1|A|U|1160
*
9G6J|1|A|G|1450
9G6J|1|A|C|1451
9G6J|1|A|G|1452
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain PT
- Transfer RNA; tRNA
- Chain R
- Ribosomal 40S subunit protein S16A
- Chain T
- Ribosomal 40S subunit protein S18B
- Chain U
- Ribosomal 40S subunit protein S19A
- Chain V
- Ribosomal 40S subunit protein S20
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