IL_9G6J_205
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UGGC*GUCUGUGA
- Length
- 12 nucleotides
- Bulged bases
- 9G6J|1|A|U|1418, 9G6J|1|A|G|1421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G6J_205 not in the Motif Atlas
- Homologous match to IL_8CRE_454
- Geometric discrepancy: 0.0704
- The information below is about IL_8CRE_454
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41257.1
- Basepair signature
- cWW-L-tHS-L-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
9G6J|1|A|U|1261
9G6J|1|A|G|1262
9G6J|1|A|G|1263
9G6J|1|A|C|1264
*
9G6J|1|A|G|1415
9G6J|1|A|U|1416
9G6J|1|A|C|1417
9G6J|1|A|U|1418
9G6J|1|A|G|1419
9G6J|1|A|U|1420
9G6J|1|A|G|1421
9G6J|1|A|A|1422
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain E
- Ribosomal 40S subunit protein S3
- Chain L
- Ribosomal 40S subunit protein S10A
- Chain V
- Ribosomal 40S subunit protein S20
- Chain e
- Ribosomal 40S subunit protein S29A
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