IL_9G6J_212

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CU*AUAG

Length

6 nucleotides

Bulged bases

9G6J|1|A|U|1356, 9G6J|1|A|A|1357

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_212 not in the Motif Atlas

Geometric match to IL_7OS0_002

Geometric discrepancy: 0.1403

The information below is about IL_7OS0_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9G6J|1|A|C|1337
9G6J|1|A|U|1338
*
9G6J|1|A|A|1355
9G6J|1|A|U|1356
9G6J|1|A|A|1357
9G6J|1|A|G|1358

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

Ribosomal 40S subunit protein S16A

Chain U

Ribosomal 40S subunit protein S19A

Chain V

Ribosomal 40S subunit protein S20