IL_9G6J_227

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUCC*GCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_227 not in the Motif Atlas

Homologous match to IL_8CRE_475

Geometric discrepancy: 0.1348

The information below is about IL_8CRE_475

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9G6J|1|A|C|1662
9G6J|1|A|U|1663
9G6J|1|A|C|1664
9G6J|1|A|C|1665
*
9G6J|1|A|G|1710
9G6J|1|A|C|1711
9G6J|1|A|U|1712
9G6J|1|A|G|1713

Current chains

Chain A

18S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 7

Ribosomal 60S subunit protein L24A

Chain H

40S ribosomal protein S6

Chain J

40S ribosomal protein S8