IL_9G8M_011

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCUCCCC*GGGCCCG

Length

15 nucleotides

Bulged bases

9G8M|1|L5|C|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|C|168
9G8M|1|L5|G|169
9G8M|1|L5|C|170
9G8M|1|L5|U|171
9G8M|1|L5|C|172
9G8M|1|L5|C|173
9G8M|1|L5|C|174
9G8M|1|L5|C|175
*
9G8M|1|L5|G|261
9G8M|1|L5|G|262
9G8M|1|L5|G|263
9G8M|1|L5|C|264
9G8M|1|L5|C|265
9G8M|1|L5|C|266
9G8M|1|L5|G|267

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35