IL_9G8M_013

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUCGUGG*CGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|182
9G8M|1|L5|C|183
9G8M|1|L5|U|184
9G8M|1|L5|C|185
9G8M|1|L5|G|186
9G8M|1|L5|U|187
9G8M|1|L5|G|188
9G8M|1|L5|G|189
*
9G8M|1|L5|C|252
9G8M|1|L5|G|253
9G8M|1|L5|G|254
9G8M|1|L5|C|255

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain LY

60S ribosomal protein L26

Chain Lj

60S ribosomal protein L37