IL_9G8M_017

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

9G8M|1|L5|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_017 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.148

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9G8M|1|L5|G|348
9G8M|1|L5|A|349
9G8M|1|L5|C|350
*
9G8M|1|L8|G|25
9G8M|1|L8|C|26

Current chains

Chain L5

28S ribosomal RNA

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26