IL_9G8M_019
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_019 not in the Motif Atlas
- Homologous match to IL_8P9A_244
- Geometric discrepancy: 0.1097
- The information below is about IL_8P9A_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9G8M|1|L5|G|415
9G8M|1|L5|U|416
9G8M|1|L5|G|417
9G8M|1|L5|A|418
9G8M|1|L5|A|419
9G8M|1|L5|A|420
9G8M|1|L5|C|421
*
9G8M|1|L8|G|13
9G8M|1|L8|U|14
9G8M|1|L8|G|15
9G8M|1|L8|G|16
9G8M|1|L8|A|17
9G8M|1|L8|U|18
9G8M|1|L8|C|19
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain Le
- 60S ribosomal protein L32
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