IL_9G8M_022

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGGAUUCAAC*GCGCAUUUCCAC

Length

23 nucleotides

Bulged bases

9G8M|1|L5|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|462
9G8M|1|L5|A|463
9G8M|1|L5|G|464
9G8M|1|L5|G|465
9G8M|1|L5|A|466
9G8M|1|L5|U|467
9G8M|1|L5|U|468
9G8M|1|L5|C|469
9G8M|1|L5|A|470
9G8M|1|L5|A|471
9G8M|1|L5|C|472
*
9G8M|1|L5|G|682
9G8M|1|L5|C|683
9G8M|1|L5|G|684
9G8M|1|L5|C|685
9G8M|1|L5|A|686
9G8M|1|L5|U|687
9G8M|1|L5|U|688
9G8M|1|L5|U|689
9G8M|1|L5|C|690
9G8M|1|L5|C|691
9G8M|1|L5|A|692
9G8M|1|L5|C|693

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28