IL_9G8M_024

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCG*CGGCGAC

Length

11 nucleotides

Bulged bases

9G8M|1|L5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|488
9G8M|1|L5|C|489
9G8M|1|L5|C|490
9G8M|1|L5|G|491
*
9G8M|1|L5|C|662
9G8M|1|L5|G|663
9G8M|1|L5|G|664
9G8M|1|L5|C|665
9G8M|1|L5|G|666
9G8M|1|L5|A|667
9G8M|1|L5|C|668

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28