IL_9G8M_032

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUGGG*CGC

Length

9 nucleotides

Bulged bases

9G8M|1|L5|U|728, 9G8M|1|L5|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|726
9G8M|1|L5|C|727
9G8M|1|L5|U|728
9G8M|1|L5|G|729
9G8M|1|L5|G|730
9G8M|1|L5|G|731
*
9G8M|1|L5|C|938
9G8M|1|L5|G|939
9G8M|1|L5|C|940

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a