IL_9G8M_036

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAGGUGG*UGUUACAGCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|744
9G8M|1|L5|G|745
9G8M|1|L5|A|746
9G8M|1|L5|A|747
9G8M|1|L5|G|748
9G8M|1|L5|G|749
9G8M|1|L5|U|750
9G8M|1|L5|G|751
9G8M|1|L5|G|752
*
9G8M|1|L5|U|911
9G8M|1|L5|G|912
9G8M|1|L5|U|913
9G8M|1|L5|U|914
9G8M|1|L5|A|915
9G8M|1|L5|C|916
9G8M|1|L5|A|917
9G8M|1|L5|G|918
9G8M|1|L5|C|919
9G8M|1|L5|C|920

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a