IL_9G8M_048

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_048 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1439

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9G8M|1|L5|C|1431
9G8M|1|L5|G|1432
9G8M|1|L5|A|1433
9G8M|1|L5|G|1434
*
9G8M|1|L5|C|1450
9G8M|1|L5|G|1451
9G8M|1|L5|A|1452
9G8M|1|L5|G|1453

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LQ

60S ribosomal protein L18