IL_9G8M_088

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

9G8M|1|L5|U|2685

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_088 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2626

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9G8M|1|L5|C|2644
9G8M|1|L5|A|2645
9G8M|1|L5|G|2646
*
9G8M|1|L5|C|2683
9G8M|1|L5|G|2684
9G8M|1|L5|U|2685
9G8M|1|L5|G|2686

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34