IL_9G8M_100

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9G8M|1|L5|A|3661, 9G8M|1|L5|U|3677, 9G8M|1|L5|C|3681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_100 not in the Motif Atlas

Homologous match to IL_8P9A_311

Geometric discrepancy: 0.1489

The information below is about IL_8P9A_311

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

4

Unit IDs

9G8M|1|L5|C|3658
9G8M|1|L5|G|3659
9G8M|1|L5|A|3660
9G8M|1|L5|A|3661
9G8M|1|L5|G|3662
9G8M|1|L5|G|3663
*
9G8M|1|L5|U|3675
9G8M|1|L5|G|3676
9G8M|1|L5|U|3677
9G8M|1|L5|U|3678
9G8M|1|L5|G|3679
9G8M|1|L5|A|3680
9G8M|1|L5|C|3681
9G8M|1|L5|G|3682

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA