IL_9G8M_104

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCAAAGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|3712
9G8M|1|L5|U|3713
9G8M|1|L5|C|3714
9G8M|1|L5|A|3715
9G8M|1|L5|A|3716
9G8M|1|L5|A|3717
9G8M|1|L5|G|3718
9G8M|1|L5|U|3719
*
9G8M|1|L5|A|3730
9G8M|1|L5|A|3731
9G8M|1|L5|U|3732
9G8M|1|L5|G|3733
9G8M|1|L5|A|3734
9G8M|1|L5|A|3735
9G8M|1|L5|G|3736
9G8M|1|L5|C|3737

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a