IL_9G8M_106

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9G8M|1|L5|A|3783, 9G8M|1|L5|C|3789, 9G8M|1|L5|C|3808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_106 not in the Motif Atlas

Homologous match to IL_8P9A_318

Geometric discrepancy: 0.1453

The information below is about IL_8P9A_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

9G8M|1|L5|C|3779
9G8M|1|L5|C|3780
9G8M|1|L5|A|3781
9G8M|1|L5|A|3782
9G8M|1|L5|A|3783
9G8M|1|L5|U|3784
9G8M|1|L5|G|3785
9G8M|1|L5|C|3786
9G8M|1|L5|C|3787
9G8M|1|L5|U|3788
9G8M|1|L5|C|3789
9G8M|1|L5|G|3790
*
9G8M|1|L5|C|3806
9G8M|1|L5|G|3807
9G8M|1|L5|C|3808
9G8M|1|L5|G|3809

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA