IL_9G8M_109

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

9G8M|1|L5|U|3912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_109 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.104

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9G8M|1|L5|G|3911
9G8M|1|L5|U|3912
9G8M|1|L5|U|3913
*
9G8M|1|L5|A|4386
9G8M|1|L5|C|4387

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29