IL_9G8M_113
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAAG*CGAC
- Length
- 43 nucleotides
- Bulged bases
- 9G8M|1|L5|G|4102, 9G8M|1|L5|G|4104, 9G8M|1|L5|C|4114, 9G8M|1|L5|U|4115, 9G8M|1|L5|U|4116, 9G8M|1|L5|C|4117, 9G8M|1|L5|U|4118, 9G8M|1|L5|G|4119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G8M|1|L5|G|4089
9G8M|1|L5|G|4090
9G8M|1|L5|G|4091
9G8M|1|L5|G|4092
9G8M|1|L5|G|4093
9G8M|1|L5|C|4094
9G8M|1|L5|G|4095
9G8M|1|L5|A|4096
9G8M|1|L5|G|4097
9G8M|1|L5|C|4098
9G8M|1|L5|C|4099
9G8M|1|L5|C|4100
9G8M|1|L5|C|4101
9G8M|1|L5|G|4102
9G8M|1|L5|A|4103
9G8M|1|L5|G|4104
9G8M|1|L5|G|4105
9G8M|1|L5|G|4106
9G8M|1|L5|G|4107
9G8M|1|L5|C|4108
9G8M|1|L5|U|4109
9G8M|1|L5|C|4110
9G8M|1|L5|U|4111
9G8M|1|L5|C|4112
9G8M|1|L5|G|4113
9G8M|1|L5|C|4114
9G8M|1|L5|U|4115
9G8M|1|L5|U|4116
9G8M|1|L5|C|4117
9G8M|1|L5|U|4118
9G8M|1|L5|G|4119
9G8M|1|L5|G|4120
9G8M|1|L5|C|4121
9G8M|1|L5|G|4122
9G8M|1|L5|C|4123
9G8M|1|L5|C|4124
9G8M|1|L5|A|4125
9G8M|1|L5|A|4126
9G8M|1|L5|G|4127
*
9G8M|1|L5|C|4153
9G8M|1|L5|G|4154
9G8M|1|L5|A|4155
9G8M|1|L5|C|4156
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
- Chain SB
- 40S ribosomal protein S3a
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