IL_9G8M_123

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_123 not in the Motif Atlas

Homologous match to IL_8P9A_333

Geometric discrepancy: 0.1547

The information below is about IL_8P9A_333

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9G8M|1|L5|C|4410
9G8M|1|L5|C|4411
9G8M|1|L5|A|4412
9G8M|1|L5|A|4413
9G8M|1|L5|G|4414
*
9G8M|1|L5|C|4424
9G8M|1|L5|G|4425
9G8M|1|L5|A|4426
9G8M|1|L5|C|4427
9G8M|1|L5|G|4428

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lm

Ubiquitin-60S ribosomal protein L40