IL_9G8M_142

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUCGGAUAG*UGCGGAGUGC

Length

21 nucleotides

Bulged bases

9G8M|1|L5|C|4754, 9G8M|1|L5|C|4755, 9G8M|1|L5|U|4761, 9G8M|1|L5|C|4869, 9G8M|1|L5|G|4870, 9G8M|1|L5|A|4872, 9G8M|1|L5|G|4875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|4753
9G8M|1|L5|C|4754
9G8M|1|L5|C|4755
9G8M|1|L5|U|4756
9G8M|1|L5|C|4757
9G8M|1|L5|G|4758
9G8M|1|L5|G|4759
9G8M|1|L5|A|4760
9G8M|1|L5|U|4761
9G8M|1|L5|A|4762
9G8M|1|L5|G|4763
*
9G8M|1|L5|U|4867
9G8M|1|L5|G|4868
9G8M|1|L5|C|4869
9G8M|1|L5|G|4870
9G8M|1|L5|G|4871
9G8M|1|L5|A|4872
9G8M|1|L5|G|4873
9G8M|1|L5|U|4874
9G8M|1|L5|G|4875
9G8M|1|L5|C|4876

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a