IL_9G8M_144

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAACG*CUCGC

Length

11 nucleotides

Bulged bases

9G8M|1|L5|U|4923, 9G8M|1|L5|C|4924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|4889
9G8M|1|L5|A|4890
9G8M|1|L5|A|4891
9G8M|1|L5|A|4892
9G8M|1|L5|C|4893
9G8M|1|L5|G|4894
*
9G8M|1|L5|C|4922
9G8M|1|L5|U|4923
9G8M|1|L5|C|4924
9G8M|1|L5|G|4925
9G8M|1|L5|C|4926

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a